rs45561441 chr18:13726683 G>C

Sequence
gaagtgacgtaagcagacacgcgt[G/C]gcgcgggccgccgtttccgcaaac
ASB in cell types
K562 (myelogenous leukemia) CD14+ monocytes GM18486 (Lymphoblastoid Cell Lines) breast tumor
ASB for transcription factors
ATF2_HUMAN ZBT40_HUMAN EMSY_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN -1.69 1.69 1.001.2·10-9 1.00 n/a No Hit
ZBT40_HUMAN n/a 1.15 1.002.5·10-9 1.33 n/a No Hit
EMSY_HUMAN n/a 2.02 1.006.8·10-9 2.00 n/a n/a
STAT1_HUMAN 3.47 n/a 1.6·10-61.00 2.00 n/a No Hit
STAG1_HUMAN -0.50 1.94 1.001.6·10-6 1.00 n/a n/a
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Motif analysis

HES1_HUMAN Weak Concordant
HES1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Esophagus_Mucosa,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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