rs45577137 chr8:47739071 A>G

Sequence
ttccaggtctacggaagcagtgcc[A/G]tcgtgtggcggcatcttgcgttag
ASB in cell types
foreskin keratinocyte SUM159PT (Triple negative breast cancer) IMR-5 (Neuroblastoma)
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN BRD2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.96 -0.92 6.3·10-61.00 3.83 -2.15 Concordant
RAD21_HUMAN 1.57 -2.77 9.3·10-41.00 1.33 n/a n/a
BRD2_HUMAN 2.90 n/a 1.4·10-31.00 1.00 n/a n/a
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

EMBL-EBI eosinophil counts,  eosinophil percentage of granulocytes,  eosinophil percentage of white cells,  granulocyte percentage of myeloid white cells,  monocyte count,  monocyte percentage of white cells,  neutrophil percentage of granulocytes,  neutrophil percentage of white cells,  sum eosinophil basophil counts
GTEx eQTL Artery_Tibial,  Esophagus_Gastroesophageal_Junction

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