rs45625840 chr2:19350284 C>T
- Sequence
ggccgcccctccagggctggccag[C/T]agggggcagcgtggctctgagcgt
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.88 | 0.03 | 1.33 | -0.42 | Weak Concordant | |||
| STAG1_HUMAN | 1.32 | -1.32 | 1.00 | n/a | n/a |
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Motif analysis
