rs4615788 chr1:1013490 C>G
- Sequence
tataatagggccggtgctgcctgc[C/G]gaagccggcggctgagaggcagcg
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes BEAS-2B (bronchial epithelium) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- STAT1_HUMAN GCR_HUMAN SP7_HUMAN ZBT26_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | n/a | 3.15 | 3.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.44 | 1.51 | 1.04 | n/a | No Hit | |||
| SP7_HUMAN | n/a | 3.33 | 2.00 | n/a | No Hit | |||
| ZBT26_HUMAN | -5.59 | 3.26 | 2.00 | n/a | No Hit | |||
| ZN366_HUMAN | -5.04 | 2.96 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Spleen, Stomach, Thyroid, Whole_Blood