rs4648732 chr1:1906439 C>T
- Sequence
ctggcggctgagaggagaacgtcc[C/T]gtagggccagggtgaccagagagg
- ASB in cell types
- HEK293 (embryonic kidney) neutrophils from periferal blood CD14+ monocytes RH4 (alveolar rhabdomyosarcoma)
- ASB for transcription factors
- STAT1_HUMAN IKZF2_HUMAN SP2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.01 | n/a | 3.00 | n/a | No Hit | |||
| IKZF2_HUMAN | n/a | 3.07 | 1.00 | n/a | n/a | |||
| SP2_HUMAN | -1.62 | 2.55 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid