rs4680 chr22:19963748 G>A
- Sequence
cagcggatggtggatttcgctggc[G/A]tgaaggacaaggtgtgcatgcctg
- ASB in cell types
- HCT-116 (colon carcinoma)
- ASB for transcription factors
- MBD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MBD4_HUMAN | 0.14 | 1.64 | 1.20 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP attention-deficit/hyperactivity disorder (adhd) in adolescents, coronary artery disease (cad), height, longevity, serum creatinine, simpson-angus scale, systolic blood pressure (sbp), total cholesterol, triglycerides
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Thyroid, Whole_Blood