rs4760682 chr12:48118502 C>A

Sequence
ccagaatgtgcagaggtagagata[C/A]aagtaagcaagaggaagagggcag
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
SOX6_HUMAN NCOR1_HUMAN TAL1_HUMAN REQU_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SOX6_HUMAN n/a 3.83 1.009.2·10-5 2.00 n/a No Hit
NCOR1_HUMAN -1.94 2.72 1.000.03 2.00 n/a n/a
TAL1_HUMAN -1.54 2.49 1.000.04 2.00 3.17 Concordant
REQU_HUMAN -0.58 2.32 0.960.05 2.00 n/a n/a
Items per page:
1 – 4 of 4

Motif analysis

TAL1_HUMAN Concordant
TAL1_HUMAN pic

Genetic associations

EMBL-EBI hematocrit,  hemoglobin concentration,  red blood cell count
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Spinal_cord_cervical_c-1,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

Download