rs4761396 chr12:77742164 A>G

Sequence
cctctatacaagttgtcctattgc[A/G]taattcttaggtttgctttttttt
ASB in cell types
MSC (mesenchymal stem cells) T47D (invasive ductal carcinoma)
ASB for transcription factors
CEBPB_HUMAN CEBPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN n/a 2.25 1.003.8·10-3 1.25 4.53 Concordant
CEBPA_HUMAN n/a 2.58 1.000.02 1.50 0.24 Weak Concordant
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Motif analysis

CEBPA_HUMAN Weak Concordant
CEBPA_HUMAN pic

Genetic associations

GRASP college completion,  diastolic blood pressure (dbp),  ldl cholesterol,  refractive error,  systolic blood pressure (sbp),  waist hip ratio

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