rs4761701 chr12:93315956 G>A

Sequence
atccctgggagaagcagagtgggc[G/A]tactgtgggcttaggctcactaag
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
EGR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EGR1_HUMAN 2.40 n/a 1.3·10-51.00 2.00 -3.04 Concordant
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Motif analysis

EGR1_HUMAN Concordant
EGR1_HUMAN pic

Genetic associations

GRASP ldl cholesterol,  simpson-angus scale,  systolic blood pressure (sbp),  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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