rs4761856 chr12:52287272 C>T
- Sequence
cttgcagcgggcatcactgagggc[C/T]gcctcaccctgctgctcagactgg
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM12891 (male B- cells lymphoblastoid cell line) GM02255 (Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.87 | 0.53 | 1.24 | 0.05 | Weak Discordant | |||
| STAG1_HUMAN | 1.84 | -0.14 | 1.08 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Lung, Muscle_Skeletal, Thyroid