rs4765603 chr12:124713820 G>A
- Sequence
aaagtctattcaaaatgaaagtgc[G/A]gcgggaaggaaggaaattctgact
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) activated primary CD4+ T cells from blood CAR-T cells
- ASB for transcription factors
- FOXK2_HUMAN NFAC2_HUMAN IRF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.90 | n/a | 1.00 | n/a | No Hit | |||
| NFAC2_HUMAN | -3.96 | 2.61 | 2.00 | n/a | No Hit | |||
| IRF4_HUMAN | 0.92 | -0.29 | 1.33 | 1.61 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), cystatin c in serum, infant head circumference, obesity with early age of onset (age >2)