rs4768412 chr12:42475338 C>T

Sequence
gcctggctggtaccattagtgtta[C/T]ggcatttaatcactgcatcaagca
ASB in cell types
2588 (Lymphoblastoid Cell Lines)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.63 -0.52 2.4·10-61.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI autoimmune thyroid diseases (graves disease or hashimotos thyroiditis),  graves disease
GRASP 2 hour glucose,  graves disease,  graves disease and hashimotos thyroiditis,  ldl cholesterol,  primary biliary cirrhosis,  refractive error,  rheumatoid arthritis,  sporadic creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hippocampus,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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