rs4768587 chr12:39145452 C>T
- Sequence
cgtgttcgcggccggctcagggtc[C/T]ggcgctgaggacgcgtgtgcgggg
- ASB in cell types
- upper lobe of left lung WA01 (H1, human embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN EZH2_HUMAN TIF1B_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -1.25 | 3.43 | 1.00 | n/a | No Hit | |||
| EZH2_HUMAN | 1.97 | -1.77 | 1.00 | n/a | n/a | |||
| TIF1B_HUMAN | 2.06 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, hdl cholesterol
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Skin_Sun_Exposed_Lower_leg, Whole_Blood