rs4771157 chr13:27712611 C>T
- Sequence
caaaccatcttctgtgtattgtca[C/T]cgcccccaccagggccaatgagtt
- ASB in cell types
- liver MS-1 (Small cell lung carcinoma) GM17942 (lymphoblastoid cell) GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.13 | 1.93 | 1.58 | -0.90 | Weak Discordant | |||
| STAG1_HUMAN | -0.26 | 1.84 | 1.17 | n/a | n/a | |||
| RAD21_HUMAN | -0.32 | 2.60 | 1.33 | n/a | n/a |
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Motif analysis
