rs4776639 chr15:64873260 G>A

Sequence
acggtggctccaagggttacagct[G/A]agtttgagcctcctcaggaacttg
ASB in cell types
sigmoid colon macrophages form periferal blood
ASB for transcription factors
EP300_HUMAN RAD21_HUMAN SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EP300_HUMAN -3.35 3.24 1.001.3·10-4 1.00 n/a n/a
RAD21_HUMAN -0.23 2.74 0.860.01 1.75 n/a n/a
SPI1_HUMAN 1.83 -0.53 0.041.00 1.95 n/a No Hit
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Motif analysis

No data available

Genetic associations

Finemapping platelet counts
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Spleen,  Thyroid,  Whole_Blood

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