rs4776887 chr15:67089373 G>A

Sequence
ctcagcctcccggtggggtgatga[G/A]tcacaccagtgggaaagtgcactg
ASB in cell types
HEK293 (embryonic kidney) HCASMC (Human coronary artery smooth muscle cells) A549 (lung carcinoma) HEK293T (embryonic kidney)
ASB for transcription factors
JUND_HUMAN GLIS1_HUMAN SP7_HUMAN LMBL2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUND_HUMAN 3.04 n/a 4.4·10-101.00 1.33 -3.57 Concordant
GLIS1_HUMAN 1.83 -0.80 6.6·10-41.00 1.17 n/a No Hit
SP7_HUMAN 2.79 -2.86 0.011.00 1.00 n/a No Hit
LMBL2_HUMAN 2.56 n/a 0.011.00 1.00 n/a n/a
NOTC1_HUMAN 1.90 n/a 0.011.00 2.00 n/a n/a
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Motif analysis

JUND_HUMAN Concordant
JUND_HUMAN pic

Genetic associations

GRASP birth weight,  chronic kidney disease,  height,  obesity with early age of onset (age >2)
GTEx eQTL Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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