rs4777306 chr15:70763521 T>G
- Sequence
ggcgcgggctgtaccagccccacc[T/G]gcctgccacctgcgggccccgggc
- ASB in cell types
- HepG2 (hepatoblastoma) thyroid gland HEK293 (embryonic kidney) breast tumor
- ASB for transcription factors
- LMBL2_HUMAN RBM25_HUMAN CTCF_HUMAN ZEB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMBL2_HUMAN | 1.88 | -1.88 | 1.00 | n/a | n/a | |||
| RBM25_HUMAN | 0.77 | -0.42 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.31 | 0.78 | 1.10 | 0.75 | Weak Discordant | |||
| ZEB1_HUMAN | 1.95 | -1.75 | 1.00 | -5.43 | Concordant | |||
| ZNF10_HUMAN | -2.52 | 2.62 | 1.00 | n/a | No Hit |
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Motif analysis
