rs4777321 chr15:70868025 T>C
- Sequence
ttgagagcagagtgtttttccttc[T/C]ctttggcttgattgtctttcaccc
- ASB in cell types
- SK-N-SH (neuroblastoma)
- ASB for transcription factors
- HTF4_HUMAN GATA3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | 2.86 | -0.91 | 1.00 | n/a | No Hit | |||
| GATA3_HUMAN | 2.24 | -2.06 | 1.00 | -3.40 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, ldl cholesterol, ldl cholesterol change with statins, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Ovary, Pancreas, Thyroid