rs4779612 chr15:33242856 C>T
- Sequence
tatccagaccagcagagggcatga[C/T]actaatggctatcatgttgaagac
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) macrophages form periferal blood HeLa S3 (cervical adenocarcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.34 | 0.92 | 1.44 | 0.50 | Weak Concordant | |||
| STAG1_HUMAN | 0.08 | 1.79 | 1.00 | n/a | n/a |
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Motif analysis
