rs4779839 chr15:31200860 C>T
- Sequence
acgccgtcaccagcaggtggggac[C/T]gtcagccactttctggcaaatctc
- ASB in cell types
- A549 (lung carcinoma) ID00014 (lymphoblastoid cell, DiGeorge syndrome) GM17942 (lymphoblastoid cell) thoracic aorta
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.49 | 1.27 | 1.49 | -1.31 | Weak Concordant | |||
| RAD21_HUMAN | 1.83 | 0.47 | 1.30 | n/a | n/a | |||
| SMC3_HUMAN | 1.49 | -0.06 | 1.53 | n/a | n/a | |||
| STAG1_HUMAN | 1.43 | 0.41 | 3.03 | n/a | n/a |
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Motif analysis
