rs4780465 chr16:12613666 T>C
- Sequence
aagtttctcttcaaagaatcatta[T/C]gtcagtatgttcagctctctcatt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN ATF2_HUMAN IKZF1_HUMAN FLI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | n/a | 1.56 | 3.00 | n/a | n/a | |||
| ATF2_HUMAN | n/a | 1.68 | 3.00 | 4.70 | Concordant | |||
| IKZF1_HUMAN | 0.59 | 0.92 | 3.33 | n/a | n/a | |||
| FLI1_HUMAN | -1.09 | 1.67 | 1.00 | n/a | No Hit | |||
| SRF_HUMAN | n/a | 2.19 | 1.00 | n/a | No Hit |
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Motif analysis
