rs4781030 chr16:10988606 C>T
- Sequence
cttcctagcctgccccttgaatgc[C/T]gccttctctttgcctcagtggctg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) ZNF532-NUT 24335 (NUT-midline carcinoma) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- SPI1_HUMAN ZN532_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | -0.17 | 0.97 | 1.12 | n/a | No Hit | |||
| ZN532_HUMAN | n/a | 3.26 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Nucleus_accumbens_basal_ganglia, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid