rs4782245 chr16:19396615 G>T
- Sequence
cactgttaaaggaacgcctgtaaa[G/T]atttactacagtagcctgggccat
- ASB in cell types
- LNCaP (prostate carcinoma) ZR-75-1 (invasive ductal carcinoma) breast tumor breast tumor xenograft
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.17 | 2.48 | 1.83 | 3.41 | Concordant | |||
| ANDR_HUMAN | 0.30 | 1.47 | 1.49 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood