rs4782346 chr16:88755687 C>G
- Sequence
gctttgcttataccgccttttcac[C/G]gaacggtggcgcctaccctcaaag
- ASB in cell types
- LNCaP (prostate carcinoma) esophagus squamous epithelium MCF7L-P(immortalized breast epithelial cell line) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN STAT3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.72 | 0.15 | 2.19 | -3.67 | Concordant | |||
| STAG1_HUMAN | 2.47 | n/a | 1.00 | n/a | n/a | |||
| STAT3_HUMAN | 2.94 | n/a | 3.00 | 3.22 | Discordant |
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Motif analysis
