rs4782447 chr16:89115482 T>C
- Sequence
ccacagtcaactgcctgtgctgtg[T/C]gcgtcagagcccgcgcctttccct
- ASB in cell types
- CD14+ monocytes SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive) HUVEC-C (HUVEC, umbilical vein endothelial cells) Jurkat (T-cells)
- ASB for transcription factors
- STAT1_HUMAN GATA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 0.20 | 1.98 | 2.00 | n/a | No Hit | |||
| GATA2_HUMAN | 2.34 | 0.38 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood