rs4782488 chr16:88975210 C>T
- Sequence
agccatgtcagaggtccaccctga[C/T]cctctgctcctcacctgcagccat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- IKZF2_HUMAN ESR1_HUMAN BACH1_HUMAN NFAC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 3.27 | -3.41 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 0.49 | 1.97 | 2.35 | -3.25 | Discordant | |||
| BACH1_HUMAN | 2.90 | n/a | 1.00 | n/a | No Hit | |||
| NFAC3_HUMAN | 2.65 | n/a | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.42 | -2.26 | 1.00 | n/a | n/a |
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Motif analysis
