rs4782573 chr16:83953647 G>A

Sequence
cagtcccagcgtaccctgggccat[G/A]tgaccgccgctcctagcaggaaag
ASB in cell types
SK-N-SH (neuroblastoma) RKO (colon carcinoma cell)
ASB for transcription factors
USF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
USF1_HUMAN 2.56 -2.14 7.4·10-31.00 1.50 -4.27 Concordant
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Motif analysis

USF1_HUMAN Concordant
USF1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Hypothalamus,  Cells_EBV-transformed_lymphocytes,  Liver,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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