rs4784227 chr16:52565276 C>T
- Sequence
aaagtcccaatttgtagtgtttgc[C/T]gattattgtgatgtaaatactccc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.69 | 1.04 | 1.84 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.45 | 0.92 | 1.77 | 1.70 | Weak Concordant |
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Motif analysis
Genetic associations
EMBL-EBI brca1/2-negative high-risk breast cancer, breast cancer, breast cancer (estrogen-receptor negative), breast cancer (estrogen-receptor positive), parkinsons disease, systolic blood pressure
GRASP breast cancer, breast cancer (estrogen receptor negative breast cancer), breast cancer (estrogen receptor positive breast cancer), breast cancer (familial breast cancer), breast cancer (progesterone receptor negative breast cancer), breast cancer (progesterone receptor positive breast cancer), fasting blood glucose, fasting insulin, homa-ir, major depressive disorder, refractive error