rs4784880 chr16:58005618 T>G
- Sequence
gctacaaactaatgattaataata[T/G]tcatatataatcatgtctatgatc
- ASB in cell types
- GM18486 (Lymphoblastoid Cell Lines) MCF10AT1 (breast premetastatic epithelial cells) GM19238 (female B-cells lymphoblastoid cell lines)
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM18486 (Lymphoblastoid Cell Lines) | -1.35 | 2.55 | 1.00 | |||
| MCF10AT1 (breast premetastatic epithelial cells) | 2.38 | n/a | 1.00 | |||
| GM19238 (female B-cells lymphoblastoid cell lines) | 0.77 | -0.67 | 1.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus, Whole_Blood