rs4786463 chr16:4183900 A>C
- Sequence
cgccccgcccccagcgcccacgcg[A/C]ctccggccccgaggctctcccgag
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes HCT-116 (colon carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN SP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.37 | 2.01 | 2.00 | n/a | No Hit | |||
| SP2_HUMAN | -4.71 | 2.19 | 2.00 | 1.23 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid