rs4786601 chr16:5098322 C>G
- Sequence
ctgggaggcggagcttaggacggg[C/G]cgacgtggggaggggcccagggtc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- MNT_HUMAN RBM25_HUMAN SP1_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 2.01 | -3.09 | 2.00 | 0.40 | Weak Discordant | |||
| RBM25_HUMAN | 1.54 | -0.04 | 2.00 | n/a | n/a | |||
| SP1_HUMAN | 1.62 | -0.45 | 2.00 | 0.30 | Weak Discordant | |||
| NRF1_HUMAN | 0.86 | n/a | 2.00 | n/a | No Hit | |||
| GLIS2_HUMAN | 2.42 | -1.96 | 1.00 | 0.60 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Pancreas, Prostate, Spleen, Thyroid