rs4787645 chr16:30446029 C>T
- Sequence
accgcttgcaacgggattgcagaa[C/T]gtcacgtgctttccttcgctctct
- ASB in cell types
- HEK293T (embryonic kidney) HS578T (invasive ductal breast carcinoma) GM12892 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SMAD2_HUMAN TBX3_HUMAN TEAD3_HUMAN PKNX1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD2_HUMAN | -4.01 | 2.54 | 2.00 | n/a | No Hit | |||
| TBX3_HUMAN | 3.40 | n/a | 2.00 | n/a | No Hit | |||
| TEAD3_HUMAN | 3.03 | -5.36 | 2.00 | n/a | No Hit | |||
| PKNX1_HUMAN | -0.07 | 0.36 | 2.00 | 2.48 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Cerebellum, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood