rs4788862 chr17:75087301 G>C

Sequence
tgaacccagaaggcggaggctgca[G/C]tgagctgaggtcgcgccgctgcac
ASB in cell types
K562 (myelogenous leukemia) HCT-116 (colon carcinoma)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
K562 (myelogenous leukemia) -0.04 0.83 1.004.7·10-8 2.00
HCT-116 (colon carcinoma) 0.16 1.00 0.970.04 1.85
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GRASP infant head circumference,  mitral annular calcium,  years of education
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

Download