rs4789238 chr17:73641921 T>G
- Sequence
ccacaatcctttgcaaggcttgcc[T/G]ccagggacacacacagcaggagag
- ASB in cell types
- HEK293 (embryonic kidney) D283 Med (medulloblastoma) neural cell
- ASB for transcription factors
- GLIS1_HUMAN OTX2_HUMAN ARNT_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | 1.69 | n/a | 2.00 | -3.39 | Concordant | |||
| OTX2_HUMAN | -2.00 | 2.94 | 2.00 | n/a | No Hit | |||
| ARNT_HUMAN | 2.78 | -5.01 | 2.00 | n/a | No Hit |
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Motif analysis
