rs4789326 chr17:76611554 C>G
- Sequence
ctgtttattctcacagctccctgc[C/G]cctccctaattgcatcacactgca
- ASB in cell types
- K562 (myelogenous leukemia) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- ATF4_HUMAN CEBPB_HUMAN SOX6_HUMAN ATF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF4_HUMAN | 2.77 | n/a | 2.00 | n/a | No Hit | |||
| CEBPB_HUMAN | 2.46 | -1.65 | 2.00 | n/a | No Hit | |||
| SOX6_HUMAN | 3.26 | n/a | 2.00 | n/a | No Hit | |||
| ATF3_HUMAN | 1.70 | n/a | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.15 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood