rs4789443 chr17:77325111 A>G
- Sequence
ggagttacaggcgtgagtcaccgc[A/G]cccaggctgatatgcaaatatttt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Detroit 562 (Pharyngeal squamous cell carcinoma)
- ASB for transcription factors
- COT1_HUMAN TF65_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 2.13 | -1.89 | 1.00 | n/a | No Hit | |||
| TF65_HUMAN | 0.54 | 1.91 | 2.56 | n/a | No Hit | |||
| SMCA4_HUMAN | -0.69 | 2.05 | 2.00 | n/a | n/a |
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