rs4790311 chr17:2075894 T>C
- Sequence
cgctgcagctccagctgcacaggc[T/C]ctgagagctccccacacccctttt
- ASB in cell types
- SEM (childhood B acute lymphoblastic leukemia) GM12891 (male B- cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- ERG_HUMAN STAG1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERG_HUMAN | 2.87 | -4.29 | 1.33 | n/a | No Hit | |||
| STAG1_HUMAN | -2.45 | 2.39 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.69 | 1.65 | 1.08 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood