rs4790332 chr17:2359317 G>A
- Sequence
tattcatcacacgtgcacactctc[G/A]gtggggaacaccttgtgggcatgg
- ASB in cell types
- HEK293 (embryonic kidney) HKC8 (kidney proximal tubule cell line)
- ASB for transcription factors
- GLIS1_HUMAN HIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | n/a | 2.12 | 2.00 | 0.90 | Weak Concordant | |||
| HIF1A_HUMAN | 0.08 | 2.45 | 1.00 | 1.18 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid