rs4794192 chr17:50944442 G>A

Sequence
ggaggtggggaggtggggctgtcg[G/A]tgctccagggtccccgcagagggc
ASB in cell types
breast tumor T47D (invasive ductal carcinoma) thoracic aorta 22RV1 (prostate carcinoma)
ASB for transcription factors
ESR1_HUMAN CTCF_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.32 1.22 1.009.7·10-6 1.95 n/a No Hit
CTCF_HUMAN -0.44 1.58 1.004.4·10-5 1.10 n/a No Hit
ANDR_HUMAN 2.87 0.33 1.0·10-20.96 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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