rs4794586 chr17:55437447 C>T
- Sequence
atttgtctcctgctctgcatcttc[C/T]cctagtgttcacagaaactgttct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18486 (Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN TBX21_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.02 | 0.77 | 1.25 | -2.72 | Concordant | |||
| STAG1_HUMAN | 1.68 | -0.08 | 1.12 | n/a | n/a | |||
| TBX21_HUMAN | 2.12 | -1.81 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 0.96 | -0.11 | 1.00 | n/a | n/a |
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Motif analysis
