rs4794673 chr17:56870627 G>C
- Sequence
accctcgggaatgacatagtccat[G/C]ctggtttcctccagttgtctgatc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MM1.S (plasma cell myeloma) breast tumour metastasis
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN ESR1_HUMAN ZN143_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.30 | -0.61 | 1.58 | n/a | n/a | |||
| IKZF2_HUMAN | 2.17 | -1.76 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | -0.33 | 2.36 | 2.00 | n/a | No Hit | |||
| ZN143_HUMAN | 2.35 | -1.88 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid