rs4794799 chr17:39056999 T>C
- Sequence
gcgcctctttttttaaaaaaagcg[T/C]gggcgtgccttgcgcaggcgcagt
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) BJ1-hTERT (Human fibroblast telomerase immortalized cell line) LNCaP (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ZBT8A_HUMAN SPT5H_HUMAN EGR1_HUMAN ZBT26_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT8A_HUMAN | n/a | 3.81 | 2.00 | n/a | n/a | |||
| SPT5H_HUMAN | -1.31 | 2.48 | 1.50 | n/a | n/a | |||
| EGR1_HUMAN | 3.45 | -3.32 | 1.00 | -6.45 | Concordant | |||
| ZBT26_HUMAN | n/a | 2.37 | 2.00 | n/a | No Hit | |||
| KLF9_HUMAN | 2.36 | -2.71 | 1.50 | -2.67 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood