rs4795337 chr17:39057054 C>T

Sequence
cgagccttagccgcgcaggctcag[C/T]gaagggaggctggcggatctgcta
ASB in cell types
K562 (myelogenous leukemia) LNCaP (prostate carcinoma)
ASB for transcription factors
NRF1_HUMAN ZBT8A_HUMAN ZBT26_HUMAN KLF9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN -0.58 2.33 1.004.4·10-10 2.25 0.74 Weak Concordant
ZBT8A_HUMAN n/a 2.68 1.001.3·10-4 2.00 n/a n/a
ZBT26_HUMAN n/a 2.02 1.001.1·10-3 2.00 n/a No Hit
KLF9_HUMAN 1.93 n/a 4.7·10-31.00 2.00 n/a No Hit
IKZF1_HUMAN -4.94 2.87 1.006.8·10-3 2.00 n/a n/a
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Motif analysis

NRF1_HUMAN Weak Concordant
NRF1_HUMAN pic

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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