rs4795456 chr17:28745445 G>A
- Sequence
ccggccctctgggttccagatgag[G/A]ccagctgagccccccgaccccccc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) brain prefrontal cortex region tissues 22RV1 (prostate carcinoma)
- ASB for transcription factors
- OLIG2_HUMAN ANDR_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| OLIG2_HUMAN | -1.22 | 1.22 | 1.00 | 1.09 | Weak Concordant | |||
| ANDR_HUMAN | 2.60 | n/a | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.68 | -1.16 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, ldl cholesterol, mean corpuscular hemoglobin concentration (mchc), mean corpuscular volume (mcv), presence of peripupillary pigmented ring, red blood cell count (rbc), systolic blood pressure (sbp), total cholesterol, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood