rs4795657 chr17:31834617 G>A

Sequence
cagagagaagagaaaccagaagag[G/A]gggtgaagaggggaagccactgtg
ASB in cell types
monocyte-derived dendritic cells GM19239 (male B-cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.35 -0.69 0.021.00 1.06 -3.21 Concordant
STAG1_HUMAN 1.41 -0.13 0.041.00 1.07 n/a n/a
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GRASP bipolar disorder,  hdl cholesterol,  height,  ldl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Putamen_basal_ganglia,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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