rs4796141 chr17:35947209 A>G

Sequence
catggttgagaaccacagcatcag[A/G]tagattcagaagtgggggaaaagc
ASB in cell types
T47D (invasive ductal carcinoma) HeLa (cervical adenocarcinoma) foreskin keratinocyte monocyte-derived dendritic cells
ASB for transcription factors
CTCF_HUMAN SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.82 0.39 4.4·10-271.00 1.37 n/a No Hit
SPI1_HUMAN 1.92 0.65 1.4·10-81.00 2.48 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum
GTEx eQTL Adipose_Subcutaneous,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Esophagus_Muscularis,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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