rs4796299 chr17:7295522 G>A
- Sequence
acacaaggtctccctctgtcgccc[G/A]ggctggagcgcagtgcgcgatctg
- ASB in cell types
- GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.10 | 1.60 | 1.19 | 0.30 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Pancreas, Skin_Sun_Exposed_Lower_leg, Thyroid