rs4796424 chr17:7484654 T>C
- Sequence
ctcctccggctttttcctcccaac[T/C]cggggaggtccttcccggtggccg
- ASB in cell types
- germinal center CD77+ B cells naive IgD+ B cells breast tumor 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXP1_HUMAN ESR1_HUMAN ANDR_HUMAN JUN_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXP1_HUMAN | 2.71 | 0.33 | 1.62 | n/a | No Hit | |||
| ESR1_HUMAN | 2.60 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.65 | -3.01 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.67 | 0.56 | 3.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.98 | 0.23 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood