rs4796585 chr17:42458793 T>C
- Sequence
gcactgctgcagcccgggcgaggc[T/C]gcgccccattggccaactgcaatg
- ASB in cell types
- monocytes from periferal blood BJAB (Burkitt lymphoma)
- ASB for transcription factors
- SRBP2_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | n/a | 2.68 | 2.50 | 2.12 | Concordant | |||
| SPT5H_HUMAN | 2.53 | -2.23 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Whole_Blood