rs4796702 chr17:41786667 T>C
- Sequence
gcggacagcgaactgagctcggcg[T/C]ggtcgggcggcggctgctccggac
- ASB in cell types
- K562 (myelogenous leukemia) Peyer's patch GM18951 (B-cells Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ILF3_HUMAN NRF1_HUMAN TBP_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.67 | 1.16 | 1.41 | 2.73 | Concordant | |||
| ILF3_HUMAN | -4.01 | 1.90 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | -3.90 | 1.51 | 2.00 | n/a | No Hit | |||
| TBP_HUMAN | 0.35 | 0.55 | 1.12 | n/a | No Hit |
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Motif analysis
